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ZAPBench: A Benchmark for Whole-Brain Activity Prediction in Zebrafish
Alexander Immer
Alex Bo-Yuan Chen
Mariela D. Petkova
Nirmala A. Iyer
Luuk Willem Hesselink
Aparna Dev
Gudrun Ihrke
Woohyun Park
Alyson Petruncio
Aubrey Weigel
Wyatt Korff
Florian Engert
Jeff W. Lichtman
Misha B. Ahrens
International Conference on Learning Representations (ICLR) (2025)
Multi-Layered Maps of Neuropil with Segmentation Guided Contrastive Learning
Sven Dorkenwald
Daniel R. Berger
Agnes L. Bodor
Forrest Collman
Casey M. Schneider-Mizell
Nuno Maçarico da Costa
Jeff W. Lichtman
Nature Methods (2023)
SyConn2: dense synaptic connectivity inference for volume electron microscopy
Philipp J. Schubert
Sven Dorkenwald
Jonathan Klimesch
Fabian Svara
Andrei Mancu
Hashir Ahmad
Michale S. Fee
Joergen Kornfeld
Nature Methods, 19 (2022), 1367–1370
Structured sampling of olfactory input by the fly mushroom body
Zhihao Zheng
Feng Li
Corey Fisher
Iqbal J. Ali
Nadiya Sharifi
Steven Calle-Schuler
Joseph Hsu
Najla Masoodpanah
Lucia Kmecova
Tom Kazimiers
Eric Perlman
Matthew Nichols
Davi Bock
Current Biology, 32 (2022), pp. 3334-3349
A connectomic study of a petascale fragment of human cerebral cortex
Alex Shapson-Coe
Daniel R. Berger
Yuelong Wu
Richard L. Schalek
Shuohong Wang
Neha Karlupia
Sven Dorkenwald
Evelina Sjostedt
Dongil Lee
Luke Bailey
Angerica Fitzmaurice
Rohin Kar
Benjamin Field
Hank Wu
Julian Wagner-Carena
David Aley
Joanna Lau
Zudi Lin
Donglai Wei
Hanspeter Pfister
Adi Peleg
Jeff W. Lichtman
bioRxiv (2021)
Denoising-based Image Compression for Connectomics
Alex Shapson-Coe
Richard L. Schalek
Johannes Ballé
Jeff W. Lichtman
bioRxiv (2021)
An anatomical substrate of credit assignment in reinforcement learning
Jorgen Kornfeld
Michale S. Fee
Philipp Schubert
Winfried Denk
bioRxiv (2020)
The Mind of a Mouse
Larry F. Abbott
Davi D. Bock
Edward M. Callaway
Winfried Denk
Catherine Dulac,
Adrienne L. Fairhall
Ila Fiete
Kristen M. Harris
Moritz Helmstaedter
Narayanan Kasthuri
Yann LeCun
Jeff W. Lichtman
Peter B. Littlewood
Liqun Luo
John H.R. Maunsell
R. Clay Reid
Bruce R. Rosen
Gerald M. Rubin
Terrence J. Sejnowski
H. Sebastian Seung
Karel Svoboda
David W. Tank
Doris Tsao
David C. Van Essen
Cell, 182 (2020)