Subhashini Venugopalan
I work on machine learning applications motivated in
healthcare
and sciences.
Some of my work pertains to improving speech recognition systems for users
with impaired
speech, others to transfer learning for bio/medical data
(e.g. detecting diabetic
retinopathy,
breast
cancer), and I have also developed methods
to interpret such vision/audio models (model explanation) for medical applications.
During my graduate studies, I applied natural language
processing and computer vision techniques to generate descriptions of
events depicted in videos and images. I am a key contributor to a number of works featuring in
the
Healed through
A.I. documentary.
Please refer to my website (https://vsubhashini.github.io/) for more information and my Google
Scholar page for an up-to-date list of my publications.
Authored Publications
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Large Language Models as a Proxy For Human Evaluation in Assessing the Comprehensibility of Disordered Speech Transcription
Richard Cave
Katie Seaver
Jordan Green
Rus Heywood
Proceedings of ICASSP, IEEE (2024)
Preview abstract
Automatic Speech Recognition (ASR) systems, despite significant advances in recent years, still have much room for improvement particularly in the recognition of disordered speech. Even so, erroneous transcripts from ASR models can help people with disordered speech be better understood, especially if the transcription doesn’t significantly change the intended meaning. Evaluating the efficacy of ASR for this use case requires a methodology for measuring the impact of transcription errors on the intended meaning and comprehensibility. Human evaluation is the gold standard for this, but it can be laborious, slow, and expensive. In this work, we tune and evaluate large language models for this task and find them to be a much better proxy for human evaluators than other metrics commonly used. We further present a case-study using the presented approach to assess the quality of personalized ASR models to make model deployment decisions and correctly set user expectations for model quality as part of our trusted tester program.
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SkipWriter: LLM-Powered Abbreviated Writing on Tablets
Zheer Xu
Mukund Varma T
Proceedings of UIST 2024 (2024)
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Large Language Models (LLMs) may offer transformative opportunities for text input, especially for physically demanding modalities like handwriting. We studied a form of abbreviated handwriting by designing, developing and evaluating a prototype, named SkipWriter, that convert handwritten strokes of a variable-length, prefix- based abbreviation (e.g., “ho a y” as handwritten strokes) into the intended full phrase (e.g., “how are you” in the digital format) based
on preceding context. SkipWriter consists of an in-production hand-writing recognizer and a LLM fine-tuned on this skip-writing task. With flexible pen input, SkipWriter allows the user to add and revise prefix strokes when predictions don’t match the user’s intent. An user evaluation demonstrated a 60% reduction in motor movements with an average speed of 25.78 WPM. We also showed that this reduction is close to the ceiling of our model in an offline simulation.
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Speech Intelligibility Classifiers from 550k Disordered Speech Samples
Katie Seaver
Richard Cave
Neil Zeghidour
Rus Heywood
Jordan Green
ICASSP, Icassp submission. 2022 (2023)
Preview abstract
We developed dysarthric speech intelligibility classifiers on 551,176 disordered speech samples contributed by a diverse set of 468 speakers, with a range of self-reported speaking disorders and rated for their overall intelligibility on a fivepoint scale. We trained three models following different deep learning approaches and evaluated them on ∼94K utterances from 100 speakers. We further found the models to generalize well (without further training) on the TORGO database (100% accuracy), UASpeech (0.93 correlation), ALS-TDI PMP (0.81 AUC) datasets as well as on a dataset of realistic unprompted speech we gathered (106 dysarthric and 76 control speakers, ∼2300 samples).
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SpeakFaster Observer: Long-Term Instrumentation of Eye-Gaze Typing for Measuring AAC Communication
Richard Jonathan Noel Cave
Bob MacDonald
Jon Campbell
Blair Casey
Emily Kornman
Daniel Vance
Jay Beavers
CHI23 Case Studies of HCI in Practice (2023) (to appear)
Preview abstract
Accelerating communication for users with severe motor and speech impairments, in particular for eye-gaze Augmentative and Alternative Communication (AAC) device users, is a long-standing area of research. However, observation of such users' communication over extended durations has been limited. This case study presents the real-world experience of developing and field-testing a tool for observing and curating the gaze typing-based communication of a consented eye-gaze AAC user with amyotrophic lateral sclerosis (ALS) from the perspective of researchers at the intersection of HCI and artificial intelligence (AI). With the intent to observe and accelerate eye-gaze typed communication, we designed a tool and a protocol called the SpeakFaster Observer to measure everyday conversational text entry by the consenting gaze-typing user, as well as several consenting conversation partners of the AAC user. We detail the design of the Observer software and data curation protocol, along with considerations for privacy protection. The deployment of the data protocol from November 2021 to April 2022 yielded a rich dataset of gaze-based AAC text entry in everyday context, consisting of 130+ hours of gaze keypresses and 5.5k+ curated speech utterances from the AAC user and the conversation partners. We present the key statistics of the data, including the speed (8.1±3.9 words per minute) and keypress saving rate (-0.18±0.87) of gaze typing, patterns of of utterance repetition and reuse, as well as the temporal dynamics of conversation turn-taking in gaze-based communication. We share our findings and also open source our data collections tools for furthering research in this domain.
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Practical Challenges for Investigating Abbreviation Strategies
Elisa Kreiss
CHI 2023 Workshop on Assistive Writing, ACM (2023) (to appear)
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Saying more while typing less is the ideal we strive towards when designing assistive writing technology that can minimize effort. Complementary to efforts on predictive completions is the idea to use a drastically abbreviated version of an intended message, which can then be reconstructed using Language Models. This paper highlights the challenges that arise from investigating what makes an abbreviation scheme promising for a potential application. We hope that this can provide a guide for designing studies which consequently allow for fundamental insights on efficient and goal driven abbreviation strategies.
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Context-Aware Abbreviation Expansion Using Large Language Models
Ajit Narayanan
Annual Conference of the North American Chapter of the Association for Computational Linguistics, 2022 (2022) (to appear)
Preview abstract
Motivated by the need for accelerating text entry in augmentative and alternative communication (AAC) for people with severe motor impairments, we propose a paradigm in which phrases are abbreviated aggressively as primarily word-initial letters. Our approach is to expand the abbreviations into full-phrase options by leveraging conversation context with the power of pretrained large language models (LLMs). Through zero-shot, few-shot, and fine-tuning experiments on four public conversation datasets, we show that for replies to the initial turn of a dialog, an LLM with 64B parameters is able to exactly expand over 70% of phrases with abbreviation length up to 10, leading to an effective keystroke saving rate of up to about 77% on these exact expansions. Including a small amount of context in the form of a single conversation turn more than doubles abbreviation expansion accuracies compared to having no context, an effect that is more pronounced for longer phrases. Additionally, the robustness of models against typo noise can be enhanced through fine-tuning on noisy data.
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Preview abstract
Recent advances in self-supervision have dramatically im-
proved the quality of speech representations. However, wide
deployment of state-of-the-art embedding models on devices
has been severely restricted due to their limited public avail-
ability and large resource footprint. Our work addresses these
by publicly releasing a collection of paralinguistic speech
models1 that are small, near state-of-the-art performance.
Our approach is based on knowledge distillation, and our
models are distilled only on public data. We explore differ-
ent architectures and thoroughly evaluate our models on the
Non-Semantic Speech (NOSS) benchmark. Our largest dis-
tilled model is less than 16% the size of the original model
(340MB vs 2.2GB) and achieves over 94% the accuracy on
6 of 7 tasks. The smallest model is less than 0.3% in size
(22MB) and achieves over 90% as the accuracy on 6 of 7
tasks.
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Assessing ASR Model Quality on Disordered Speech using BERTScore
Qisheng Li
Katie Seaver
Richard Jonathan Noel Cave
Proc. 1st Workshop on Speech for Social Good (S4SG) (2022), pp. 26-30 (to appear)
Preview abstract
Word Error Rate (WER) is the primary metric used to assess automatic speech recognition (ASR) model quality. It has been shown that ASR models tend to have much higher WER on speakers with speech impairments than typical English speakers. It is hard to determine if models can be be useful at such high error rates. This study investigates the use of BERTScore, an evaluation metric for text generation, to provide a more informative measure of ASR model quality and usefulness. Both BERTScore and WER were compared to prediction errors manually annotated by Speech Language Pathologists for error type and assessment. BERTScore was found to be more correlated with human assessment of error type and assessment. BERTScore was specifically more robust to orthographic changes (contraction and normalization errors) where meaning was preserved. Furthermore, BERTScore was a better fit of error assessment than WER, as measured using an ordinal logistic regression and the Akaike's Information Criterion (AIC). Overall, our findings suggest that BERTScore can complement WER when assessing ASR model performance from a practical perspective, especially for accessibility applications where models are useful even at lower accuracy than for typical speech.
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A Machine-Learning Based Objective Measure for ALS disease progression
Fernando Viera
Alan S Premasiri
Maeve McNally
Steven Perrin
npj Digital Medicine (2022)
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Amyotrophic Lateral Sclerosis (ALS) disease progression is usually measured using the subjective, questionnaire-based revised ALS Functional Rating Scale (ALSFRS-R). A purely objective measure for tracking disease progression would be a powerful tool for evaluating real-world drug effectiveness, efficacy in clinical trials, as well as identifying participants for cohort studies. Here we develop a machine learning based objective measure for ALS disease progression, based on voice samples and accelerometer measurements. The ALS Therapy Development Institute (ALS-TDI) collected a unique dataset of voice and accelerometer samples from consented individuals - 584 people living with ALS over four years. Participants carried out prescribed speaking and limb-based tasks. 542 participants contributed 5814 voice recordings, and 350 contributed 13009 accelerometer samples, while simultaneously measuring ALSFRS-R. Using the data from 475 participants, we trained machine learning (ML) models, correlating voice with bulbar-related FRS scores and accelerometer with limb related scores. On the test set (n=109 participants) the voice models achieved an AUC of 0.86 (95% CI, 0.847-0.884) , whereas the accelerometer models achieved a median AUC of 0.73 . We used the models and self-reported ALSFRS-R scores to evaluate the real-world effects of edaravone, a drug recently approved for use in ALS, on 54 test participants. In the test cohort, the digital data input into the ML models produced objective measures of progression rates over the duration of the study that were consistent with self-reported scores. This demonstrates the value of these tools for assessing both disease progression and potentially drug effects. In this instance, outcomes from edaravone treatment, both self-reported and digital-ML, resulted in highly variable outcomes from person to person.
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Guided Integrated Gradients: An Adaptive Path Method for Removing Noise
Besim Namik Avci
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2021, pp. 5050-5058
Preview abstract
Integrated Gradients (IG) is a commonly used feature attribution method for deep neural networks.
While IG has many desirable properties, when applied to visual models, the method often produces spurious/noisy pixel attributions in regions that are not related to the predicted class. While this has been previously noted, most existing solutions are aimed at addressing the symptoms by explicitly reducing the noise in the resulting attributions. In this work, we show that one of the causes of the problem is the presence of "adversarial examples'' along the IG path. To minimize the effect of adversarial examples on attributions, we propose adapting the attribution path itself. We introduce Adaptive Path Methods (APMs), as a generalization of path methods, and Guided IG as a specific instance of an APM. Empirically, Guided IG creates saliency maps better aligned with the model's prediction and the input image that is being explained. We show through qualitative and quantitative experiments that Guided IG outperforms IG on ImageNet, Open Images, and diabetic retinopathy medical images.
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