ALEXEY KOLESNIKOV
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A draft human pangenome reference
Wen-Wei Liao
Mobin Asri
Jana Ebler
Daniel Doerr
Marina Haukness
Shuangjia Lu
Julian K. Lucas
Jean Monlong
Haley J. Abel
Silvia Buonaiuto
Xian Chang
Haoyu Cheng
Justin Chu
Vincenza Colonna
Jordan M. Eizenga
Xiaowen Feng
Christian Fischer
Robert S. Fulton
Shilpa Garg
Cristian Groza
Andrea Guarracino
William T. Harvey
Simon Heumos
Kerstin Howe
Miten Jain
Tsung-Yu Lu
Charles Markello
Fergal J. Martin
Matthew W. Mitchell
Katherine M. Munson
Moses Njagi Mwaniki
Adam M. Novak
Hugh E. Olsen
Trevor Pesout
David Porubsky
Pjotr Prins
Jonas A. Sibbesen
Jouni Sirén
Chad Tomlinson
Flavia Villani
Mitchell R. Vollger
Lucinda L Antonacci-Fulton
Gunjan Baid
Carl A. Baker
Anastasiya Belyaeva
Konstantinos Billis
Andrew Carroll
Sarah Cody
Daniel Cook
Robert M. Cook-Deegan
Omar E. Cornejo
Mark Diekhans
Peter Ebert
Susan Fairley
Olivier Fedrigo
Adam L. Felsenfeld
Giulio Formenti
Adam Frankish
Yan Gao
Nanibaa’ A. Garrison
Carlos Garcia Giron
Richard E. Green
Leanne Haggerty
Kendra Hoekzema
Thibaut Hourlier
Hanlee P. Ji
Eimear E. Kenny
Barbara A. Koenig
Jan O. Korbel
Jennifer Kordosky
Sergey Koren
HoJoon Lee
Alexandra P. Lewis
Hugo Magalhães
Santiago Marco-Sola
Pierre Marijon
Ann McCartney
Jennifer McDaniel
Jacquelyn Mountcastle
Maria Nattestad
Sergey Nurk
Nathan D. Olson
Alice B. Popejoy
Daniela Puiu
Mikko Rautiainen
Allison A. Regier
Arang Rhie
Samuel Sacco
Ashley D. Sanders
Valerie A. Schneider
Baergen I. Schultz
Kishwar Shafin
Michael W. Smith
Heidi J. Sofia
Ahmad N. Abou Tayoun
Francoise Thibauld-Nissen
Francesa Floriana Tricomi
Justin Wagner
Brian Walenz
Jonathan M. D. Wood
Aleksey V. Zimin
Guillaume Borque
Mark J. P. Chaisson
Paul Flicek
Adam M. Phillippy
Justin Zook
Evan E. Eichler
David Haussler
Ting Wang
Erich D. Jarvis
Karen H. Miga
Glenn Hickey
Erik Garrison
Tobias Marschall
Ira M. Hall
Heng Li
Benedict Paten
Nature (2023)
Improving variant calling using population data and deep learning
Nae-Chyun Chen
Sidharth Goel
Andrew Carroll
BMC Bioinformatics (2023)
Local read haplotagging enables accurate long-read small variant calling
Daniel Cook
Maria Nattestad
John E. Gorzynski
Sneha D. Goenka
Euan Ashley
Miten Jain
Karen Miga
Benedict Paten
Andrew Carroll
Kishwar Shafin
bioRxiv (2023)
Accurate human genome analysis with Element Avidity sequencing
Andrew Carroll
Bryan Lajoie
Daniel Cook
Kelly N. Blease
Kishwar Shafin
Lucas Brambrink
Maria Nattestad
Semyon Kruglyak
bioRxiv (2023)
Improving variant calling using population data and deep learning
Andrew Carroll
Nae-Chyun Chen
Sidharth Goel
BMC Bioinformatics (2023)
Knowledge distillation for fast and accurate DNA sequence correction
Anastasiya Belyaeva
Joel Shor
Daniel Cook
Kishwar Shafin
Daniel Liu
Armin Töpfer
Aaron Wenger
William J. Rowell
Howard Yang
Andrew Carroll
Maria Nattestad
Learning Meaningful Representations of Life (LMRL) Workshop NeurIPS 2022
precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions.
Andrew Carroll
Gunjan Baid
Howard Yang
Maria Nattestad
Sidharth Goel
Cell Genomics (2022)
Technical development of rapid whole genome nanopore sequencing and variant identification pipeline
Andrew Carroll
Ankit Sethia
Benedict Paten
Christopher Wright
Daniel R Garalde
Dianna G. Fisk
Elizabeth Spiteri
Euan Ashley
Fritz J. Sedlazeck
Gunjan Baid
Jean Monlong
Jeffrey W Christle
John E. Gorzynski
Jonathan A Bernstein
Joseph Guillory
Karen P. Dalton
Katherine Xiong
Kishwar Shafin
Maria Nattestad
Maura RZ Ruzhnikov
Megan E. Grove
Mehrzad Samadi
Miten Jain
Sneha D. Goenka
Tanner D. Jensen
Tong Zhu
Trevor Pesout
Nature Biotechnology (2022)
Ultra-rapid whole genome nanopore sequencing in a critical care setting
Andrew Carroll
Ankit Sethia
Benedict Paten
Christopher Wright
Courtney J. Wusthoff
Daniel R Garalde
Dianna G. Fisk
Elizabeth Spiteri
Euan Ashley
Fritz J. Sedlazeck
Gunjan Baid
Henry Chubb
Jeffrey W Christle
Jeffrey W. Christle
John E. Gorzynski
Jonathan A Bernstein
Joseph Guillory
Joshua W. Knowles
Katherine Xiong
Kishwar Shafin
Kyla Dunn
Marco Perez
Maria Nattestad
Maura RZ Ruzhnikov
Megan E. Grove
Mehrzad Samadi
Michael Ma
Miten Jain
Scott R. Ceresnak
Sneha D. Goenka
Tanner D. Jensen
Tia Moscarello
Tong Zhu
Trevor Pesout
New England Journal of Medicine (2022)
How DeepConsensus Works
Aaron Wenger
Anastasiya Belyaeva
Andrew Carroll
Armin Töpfer
Ashish Teku Vaswani
Daniel Cook
Felipe Llinares
Gunjan Baid
Howard Yang
Jean-Philippe Vert
Kishwar Shafin
Maria Nattestad
Waleed Ammar
William J. Rowell
(2022)
