Kevin P. Murphy
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SPAE: Semantic Pyramid AutoEncoder for Multimodal Generation with Frozen LLMs
Zhiruo Wang
Yonatan Bisk
Alex Hauptmann
Lu Jiang
NeurIPS(2023)
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In this work, we introduce Semantic Pyramid AutoEncoder (SPAE) for enabling frozen LLMs to perform both understanding and generation tasks involving non-linguistic modalities such as images or videos. SPAE converts between raw pixels and interpretable lexical tokens (or words) extracted from the LLM's vocabulary. The resulting tokens capture both the semantic meaning and the fine-grained details needed for visual reconstruction, effectively translating the visual content into a language comprehensible to the LLM, and empowering it to perform a wide array of multimodal tasks. Our approach is validated through in-context learning experiments with frozen PaLM 2 and GPT 3.5 on a diverse set of image understanding and generation tasks. Our method marks the first successful attempt to enable a frozen LLM to generate image content while surpassing state-of-the-art performance in image understanding tasks, under the same setting, by over 25%.
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COVID-19 Open-Data: a global-scale spatially granular meta-dataset for coronavirus disease
Oscar Wahltinez
Aurora Cheung
Ruth Alcantara
Donny Cheung
Anthony Erlinger
Matt Lee
Pranali Yawalkar
Paula Lê
Ofir Picazo Navarro
Scientific Data(2022)
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This paper introduces the COVID-19 Open Dataset (COD), available at goo.gle/covid-19-open-data. A static copy is of the dataset is also available at https://doi.org/10.6084/m9.figshare.c.5399355. This is a very large “meta-dataset” of COVID-related data, containing epidemiological information, from 22,579 unique locations within 232 different countries and independent territories. For 62 of these countries we have state-level data, and for 23 of these countries we have county-level data. For 15 countries, COD includes cases and deaths stratified by age or sex. COD also contains information on hospitalizations, vaccinations, and other relevant factors such as mobility, non-pharmaceutical interventions and static demographic attributes. Each location is tagged with a unique identifier so that these different types of information can be easily combined. The data is automatically extracted from 121 different authoritative sources, using scalable open source software. This paper describes the format and construction of the dataset, and includes a preliminary statistical analysis of its content, revealing some interesting patterns.
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Machine Learning on Graphs: A Model and Comprehensive Taxonomy
Ines Chami
Sami Abu-El-Haija
Chris Ré
Journal of Machine Learning Research, 23(2022), pp. 1-64
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There has been a surge of recent interest in graph representation learning (GRL). GRL methods have generally fallen into three main categories, based on the availability of labeled data. The first, network embedding, focuses on learning unsupervised representations of relational structure. The second, graph regularized neural networks, leverages graphs to augment neural network losses with a regularization objective for semi-supervised learning. The third, graph neural networks, aims to learn differentiable functions over discrete topologies with arbitrary structure. However, despite the popularity of these areas there has been surprisingly little work on unifying the three paradigms. Here, we aim to bridge the gap between network embedding, graph regularization and graph neural networks. We propose a comprehensive taxonomy of GRL methods, aiming to unify several disparate bodies of work. Specifically, we propose the GraphEDM framework, which generalizes popular algorithms for semi-supervised learning (e.g. GraphSage, GCN, GAT), and unsupervised learning (e.g. DeepWalk, node2vec) of graph representations into a single consistent approach. To illustrate the generality of GraphEDM, we fit over thirty existing methods into this framework. We believe that this unifying view both provides a solid foundation for understanding the intuition behind these methods, and enables future research in the area.
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Plex: Towards Reliability using Pretrained Large Model Extensions
Du Phan
Mark Patrick Collier
Zi Wang
Zelda Mariet
Clara Huiyi Hu
Neil Band
Tim G. J. Rudner
Karan Singhal
Joost van Amersfoort
Andreas Christian Kirsch
Rodolphe Jenatton
Honglin Yuan
Kelly Buchanan
Yarin Gal
ICML 2022 Pre-training Workshop(2022)
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A recent trend in artificial intelligence (AI) is the use of pretrained models for language and vision tasks, which has achieved extraordinary performance but also puzzling failures. Examining tasks that probe the model’s abilities in diverse ways is therefore critical to the field. In this paper, we explore the \emph{reliability} of models, where we define a reliable model as one that not only achieves strong predictive performance but also performs well consistently over many decision-making tasks such as uncertainty (e.g., selective prediction, open set recognition), robust generalization (e.g., accuracy and scoring rules such as log-likelihood on in- and out-of-distribution datasets), and adaptation (e.g., active learning, few-shot learning). We devise 11 types of tasks over 36 datasets in order to evaluate different aspects of reliability on both vision and language domains. To improve reliability, we developed ViT-Plex and T5-Plex, \emph{p}retrained \emph{l}arge-model \emph{ex}tensions (henceforth abbreviated as \emph{plex}) for vision and language modalities. Plex greatly improves the state-of-the-art across tasks, and as a pretrained model Plex unifies the traditional protocol of designing and tuning one model for each reliability task. We demonstrate scaling effects over model sizes and pretraining dataset sizes up to 4 billion examples. We also demonstrate Plex’s capabilities on new tasks including zero-shot open set recognition, few-shot uncertainty, and uncertainty in conversational language understanding.
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Digital contact tracing apps for COVID, such as the one developed by Google and Apple, need to estimate the risk that a user was infected during a particular exposure, in order to decide whether to notify the user to take precautions, such as entering into quarantine, or requesting a test. Such risk score models contain numerous parameters that must be set by the public health authority. In this paper, we show how to automatically learn these parameters from data.
Our method needs access to exposure and outcome data. Although this data is already being collected (in an aggregated, privacy-preserving way) by several health authorities, in this paper we limit ourselves to simulated data, so that we can systematically study the different factors that affect the feasibility of the approach. In particular, we show that the parameters become harder to estimate when there is more missing data (e.g., due to infections which were not recorded by the app), and when there is model misspecification. Nevertheless, the learning approach outperforms a strong manually designed baseline. Furthermore, the learning approach can adapt even when the risk factors of the disease change, e.g., due to the evolution of new variants, or the adoption of vaccines.
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Population Based Optimization for Biological Sequence Design
Zelda Mariet
David Martin Dohan
ICML 2020(2020)
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The use of black-box optimization for the design of new biological sequences is an emerging research area with potentially revolutionary impact. The cost and latency of wet-lab experiments requires methods that find good sequences in few experimental rounds of large batches of sequences --- a setting that off-the-shelf black-box optimization methods are ill-equipped to handle. We find that the performance of existing methods varies drastically across optimization tasks, posing a significant obstacle to real-world applications. To improve robustness, we propose population-based optimization (PBO), which generates batches of sequences by sampling from an ensemble of methods. The number of sequences sampled from any method is proportional to the quality of sequences it previously proposed, allowing PBO to combine the strengths of individual methods while hedging against their innate brittleness. Adapting the population of methods online using evolutionary optimization further improves performance. Through extensive experiments on in-silico optimization tasks, we show that PBO outperforms any single method in its population, proposing both higher quality single sequences as well as more diverse batches. By its robustness and ability to design diverse, high-quality sequences, PBO is shown to be a new state-of-the art approach to the batched black-box optimization of biological sequences.
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This paper studies the problem of predicting the distribution over multiple possible future paths of people as they move through various visual scenes. We make two main contributions. The first contribution is a new dataset, created in a realistic 3D simulator, which is based on real world trajectory data, and then extrapolated by human annotators to achieve different latent goals. This provides the first benchmark for quantitative evaluation of the models to predict multi-future trajectories. The second contribution is a new model to generate multiple plausible future trajectories, which contains novel designs of using multi-scale location encodings and convolutional RNNs over graphs. We refer to our model as Multiverse. We show that our model achieves the best results on our dataset, as well as on the real-world VIRAT/ActEV dataset (which just contains one possible future).
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Resampling is a key component of sample-based recursive state estimation in particle filters. Recent work explores differentiable particle filters for end-to-end learning. However, resampling remains a challenge in these works, as it is inherently non-differentiable. We address this challenge by replacing traditional resampling with a learned neural network resampler. We present a novel network architecture, the particle transformer, and train it for particle resampling using a likelihood-based loss function over sets of particles. Incorporated into a differentiable particle filter, our model can be end-to-end optimized jointly with the other particle filter components via gradient descent. Our results show that our learned resampler outperforms traditional resampling techniques on synthetic data and in a simulated robot localization task.
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Model-Based Reinforcement Learning for Biological Sequence Design
David Dohan
Ramya Deshpande
ICLR 2020(2020)
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Being able to design biological sequences like DNA or proteins to have desired properties would have considerable impact in medical and industrial applications. However, doing so presents a challenging black-box optimization problem that requires multiple rounds of expensive, time-consuming experiments. In response, we propose using reinforcement learning (RL) for biological sequence design. RL is a flexible framework that allows us to optimize generative sequence policies to achieve a variety of criteria, including diversity among high-quality sequences discovered. We use model-based RL to improve sample efficiency, where at each round the policy is trained offline using a simulator fit on functional measurements from prior rounds. To accommodate the growing number of observations across rounds, the simulator model is automatically selected at each round from a pool of diverse models of varying capacity. On the tasks of designing DNA transcription factor binding sites, designing antimicrobial proteins, and optimizing the energy of Ising models based on protein structures, we find that model-based RL is an attractive alternative to existing methods.
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We present a method that learns to integrate temporal information, from a learned
dynamics model, with ambiguous visual information, from a learned vision model,
in the context of interacting agents. Our method is based on a graph-structured
variational recurrent neural network (Graph-VRNN), which is trained end-to-end
to infer the current state of the (partially observed) world, as well as to forecast
future states. We show that our method outperforms various baselines on two sports
datasets, one based on real basketball trajectories, and one generated by a soccer
game engine.
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